The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1750
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 169699
End posion on genome 169625
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cagaaactgc
tRNA gene sequence 
GGGGTTGTAGCTTAGCTTGGTTGGAGCACCCGGCTGATAACCGGGAGGTCACCGGTCCAA
ATCCGGTCAGCCCCAtct
Downstream region at tRNA end position 
tataattaat
Secondary structure (Cloverleaf model)
>At1750	Ile	GAT
                   c      Atct tataattaat
                     G - C
                     G - C
                     G - C
                     G - C
                     T + G
                     T - A
                     G - C          T A
                    T     T G G C C     A
    T C G A        A      | | | | |     A
  T         T T C G       A C C G G     C
  G         + | | |                 T C
  G         G A G C
    T T G          A     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTTGTAGCTTAGCTTGGTTGGAGCACCCGGCTGATAACCGGGAGGTCACCGGTCCAA
ATCCGGTCAGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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