The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1751
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 201417
End posion on genome 201344
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
attatgtagc
tRNA gene sequence 
GGGCCCGTGGGGTAGTTAGGACATCCTGTTGGCCTTCGAAGCCGAGGACCCGGGTTCAAA
TCCCGGCGGGCCCGctt
Downstream region at tRNA end position 
tatttctccg
Secondary structure (Cloverleaf model)
>At1751	Arg	TCG
                   c      Gctt tatttctccg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    T T G A        G      | | | | |     A
  A         T G G G       C C G G G     C
  G           | | +                 T T
  G         T C C T
    A C A          G     GGAC
                    T - A
                    T + G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGGGTAGTTAGGACATCCTGTTGGCCTTCGAAGCCGAGGACCCGGGTTCAAA
TCCCGGCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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