The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1753
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 296263
End posion on genome 296190
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
gctactttat
tRNA gene sequence 
GGGTCCGTAGCTCAGCTAGGTAGAGCGTCTGGCTTTTAACCAGGCGGTCAGGGGTTCAAA
TCCCCTCGGACCCGctg
Downstream region at tRNA end position 
ggtgggaaaa
Secondary structure (Cloverleaf model)
>At1753	Lys	TTT
                   t      Gctg ggtgggaaaa
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     C - G
                     G - C          T A
                    T     T C C C C     A
      C G A        A      | | | | |     A
    T       C T C G       A G G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     CGGTC
                    T + G
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    T T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTCCGTAGCTCAGCTAGGTAGAGCGTCTGGCTTTTAACCAGGCGGTCAGGGGTTCAAA
TCCCCTCGGACCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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