The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1754
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 306420
End posion on genome 306348
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
tagtatttgc
tRNA gene sequence 
AGCTCCGTGGTGTAGCGGCCAAGCATTACTGGCTCTGGACCAGTCGACGGCAGTTCGAAT
CTGCCCGGAGCTAtca
Downstream region at tRNA end position 
ttctatcttt
Secondary structure (Cloverleaf model)
>At1754	Gln	CTG
                   c      Atca ttctatcttt
                     A - T
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C          T A
                    T     C C G T C     A
      C G A        G      | | | | |     G
    G       T G T G       G G C A G     C
    G       + | | +                 T T
    C       G C A T
      C A A        T     CGAC
                    A - T
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCTCCGTGGTGTAGCGGCCAAGCATTACTGGCTCTGGACCAGTCGACGGCAGTTCGAAT
CTGCCCGGAGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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