The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1755
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 404862
End posion on genome 404790
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
agtttttgat
tRNA gene sequence 
GCCACTGTAGCTCAGCAGGTGGAGCGGCTGACTTGTAATCAGCAGGTCGGGGGATCGAAA
CCCTCCAGTGGCTtta
Downstream region at tRNA end position 
attttttgtg
Secondary structure (Cloverleaf model)
>At1755	Thr	TGT
                   t      Ttta attttttgtg
                     G - C
                     C - G
                     C - G
                     A - T
                     C - G
                     T - A
                     G - C          A A
                    T     C T C C C     A
      C G A        A      | + | | |     G
    A       C T C G       G G G G G     C
    G       | | | |                 A T
    G       G A G C
      T G          G     AGGTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCACTGTAGCTCAGCAGGTGGAGCGGCTGACTTGTAATCAGCAGGTCGGGGGATCGAAA
CCCTCCAGTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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