The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1756
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 490564
End posion on genome 490492
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
caggaaatgg
tRNA gene sequence 
GCCGTGATAGCTCAGTTGGGAGAGCGCCAGACTGAAGATCTGGAGGTCGCTGGTTCAATC
CCGGCTCACGGCActg
Downstream region at tRNA end position 
cagtataatt
Secondary structure (Cloverleaf model)
>At1756	Phe	GAA
                   g      Actg cagtataatt
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A
                     G - C
                     A - T          C T
                    T     C G G C C     A
      T G A        A      | | + | |     A
    T       C T C G       G C T G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTGATAGCTCAGTTGGGAGAGCGCCAGACTGAAGATCTGGAGGTCGCTGGTTCAATC
CCGGCTCACGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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