The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1759
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 641402
End posion on genome 641330
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
tacatgccaa
tRNA gene sequence 
GGGGCTGTGGGGTAGCTTGGTATCCTACGGGCTTTGGGAGCCTGAGACTCCGGTCCAAAT
CCGGACAGCCCCAtcc
Downstream region at tRNA end position 
gcagtgatga
Secondary structure (Cloverleaf model)
>At1759	Pro	TGG
                   a      Atcc gcagtgatga
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     A G G C C     A
      C G A        G      | | | | |     A
    T       T G G G       T C C G G     C
    T         | | +                 T C
    G       T C C T
      G T A        A     AGAC
                    C - G
                    G + T
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCTGTGGGGTAGCTTGGTATCCTACGGGCTTTGGGAGCCTGAGACTCCGGTCCAAAT
CCGGACAGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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