The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1760
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 654775
End posion on genome 654691
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
tatgagtcag
tRNA gene sequence 
GCGGAGATTGCCGAGCCAGGCCAAAGGCGATGGATTTAGGGTCCATTTCCGCAGGGATTC
GGGGGTTCGAATCCCCCTCTCCGCAtat
Downstream region at tRNA end position 
taatcatccc
Secondary structure (Cloverleaf model)
>At1760	Leu	TAG
                   g      Atat taatcatccc
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C C C C C     A
    C C G A        T      | | | | |     G
  A         G C C G       G G G G G     C
  G           | | |                 T T
  G         A G G C
    C C A A        G     TTCCGCAGGGATTC
                    A - T
                    T - A
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGATTGCCGAGCCAGGCCAAAGGCGATGGATTTAGGGTCCATTTCCGCAGGGATTC
GGGGGTTCGAATCCCCCTCTCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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