The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1762
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 690766
End posion on genome 690672
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
tggtatttgt
tRNA gene sequence 
CCCGGCTTAGCTCAGTTGGTAGAGCGACGGACTGTAGATCCGTAGGTCTCTGGTTCGAAT
CCGGAAGCCGGGActt
Downstream region at tRNA end position 
ctagtttttt
Secondary structure (Cloverleaf model)
>At1762	Tyr	GTA
                   t      Actt ctagtttttt
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     C - G
                     T - A          T A
                    T     A G G C C     A
      T G A        A      | | + | |     G
    T       C T C G       T C T G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGGCTTAGCTCAGTTGGTAGAGCGACGGACTGTAGagatgtctctgcaaacgcagatA
TCCGTAGGTCTCTGGTTCGAATCCGGAAGCCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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