The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1763
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 737083
End posion on genome 737011
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
accattaatg
tRNA gene sequence 
GCCGGGGTGGGGTAGTGGCACATCCTTGGGGACTGTGGATCCCCGGACCCGGGTTCAATT
CCCGGTCCCGGCCctt
Downstream region at tRNA end position 
ttgtattctt
Secondary structure (Cloverleaf model)
>At1763	His	GTG
                   g      Cctt ttgtattctt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T          T T
                    T     G G C C C     A
      T G A        G      | | | | |     A
    G       T G G G       C C G G G     C
    G         | | +                 T T
    C       T C C T
      A C A        T     GGAC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGGGTAGTGGCACATCCTTGGGGACTGTGGATCCCCGGACCCGGGTTCAATT
CCCGGTCCCGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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