The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1766
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 781124
End posion on genome 781052
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
taataacagt
tRNA gene sequence 
GCCGCTATAGCTCAGTAGGTAGAGCACTCGGCTGTTAACCGAGCGGTCGTCGGTTCAAAC
CCGACTGGCGGCGctc
Downstream region at tRNA end position 
attgaaaaaa
Secondary structure (Cloverleaf model)
>At1766	Asn	GTT
                   t      Gctc attgaaaaaa
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     T + G
                     A - T          C A
                    T     C A G C C     A
      T G A        A      | | | | |     A
    A       C T C G       G T C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     CGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCTATAGCTCAGTAGGTAGAGCACTCGGCTGTTAACCGAGCGGTCGTCGGTTCAAAC
CCGACTGGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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