The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1767
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 781760
End posion on genome 781689
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
acgtgtatta
tRNA gene sequence 
GGGCCGATAGATCAGAGGTAGATCGCTTCCTTGGCATGGAAGAGGGCGGGGGTTCAAATC
CCCCTCGGTCCActa
Downstream region at tRNA end position 
ggagtggtat
Secondary structure (Cloverleaf model)
>At1767	Ala	GGC
                   a      Acta ggagtggtat
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     C C C C C     A
        G A        A      | | | | |     A
      A     C T A G       G G G G G     C
      G     | | | |                 T T
      G     G A T C
        T A        G     AGGGC
                    C - G
                    T - A
                    T - A
                    C - G
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGATAGATCAGAGGTAGATCGCTTCCTTGGCATGGAAGAGGGCGGGGGTTCAAATC
CCCCTCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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