The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1769
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 909582
End posion on genome 909500
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
cagaattgat
tRNA gene sequence 
GCTGGGATAGCCTAGCCTGGTAGGGCGCAGGTCTGGAAAACCTGTGCTGAAATAGCTCGG
GAGTTCAAATCTCCCTCCCAGCGcat
Downstream region at tRNA end position 
ttgcagttat
Secondary structure (Cloverleaf model)
>At1769	Ser	GGA
                   t      Gcat ttgcagttat
                     G - C
                     C - G
                     T - A
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C C C T C     A
      C G A        A      | | | | |     A
    C       T C C G       G G G A G     C
    T       + | | |                 T T
    G       G G G C
      G T A        G     TGCTGAAATAGCTC
                    C - G
                    A - T
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGGGATAGCCTAGCCTGGTAGGGCGCAGGTCTGGAAAACCTGTGCTGAAATAGCTCGG
GAGTTCAAATCTCCCTCCCAGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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