The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1771
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 948816
End posion on genome 948732
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
acactattga
tRNA gene sequence 
GCGGAGGTTACCGAGTCAGGTTAAAGGTGACAGACTCAAGATCTGTTCCCGAAGGGGTTC
GCCGGTTCAAATCCGACCCTCCGCAtta
Downstream region at tRNA end position 
ttataaaggt
Secondary structure (Cloverleaf model)
>At1771	Leu	CAA
                   a      Atta ttataaaggt
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A G C C     A
    C T G A        T      |   | | |     A
  A         G C C A       G C C G G     C
  G           | | |                 T T
  G         A G G T
    T T A A        G     TCCCGAAGGGGTTC
                    A - T
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGGTTACCGAGTCAGGTTAAAGGTGACAGACTCAAGATCTGTTCCCGAAGGGGTTC
GCCGGTTCAAATCCGACCCTCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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