The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1772
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 1076462
End posion on genome 1076390
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
tacatttaaa
tRNA gene sequence 
GCCACTGTAGCTCAGCAGGCAGAGCAGCTGATTCGTAATCAGCAGGTCGGGGGATCGAAA
CCCTCCAGTGGCTtta
Downstream region at tRNA end position 
ttgaaaacct
Secondary structure (Cloverleaf model)
>At1772	Thr	CGT
                   a      Ttta ttgaaaacct
                     G - C
                     C - G
                     C - G
                     A - T
                     C - G
                     T - A
                     G - C          A A
                    T     C T C C C     A
      C G A        A      | + | | |     G
    A       C T C G       G G G G G     C
    G       | | | |                 A T
    G       G A G C
      C A          A     AGGTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCACTGTAGCTCAGCAGGCAGAGCAGCTGATTCGTAATCAGCAGGTCGGGGGATCGAAA
CCCTCCAGTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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