The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1773
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 1144489
End posion on genome 1144415
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
attacgaaat
tRNA gene sequence 
GGGCTCGTGGCCTAGCATGGATAAGGCACCGTCCTTCTAAGTCGGTGATCGTGGGTTCAA
ATCCCACCGAGCCCGttt
Downstream region at tRNA end position 
atattataat
Secondary structure (Cloverleaf model)
>At1773	Arg	TCT
                   t      Gttt atattataat
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C          T A
                    T     C A C C C     A
    A C G A        G      | | | | |     A
  T         T C C G       G T G G G     C
  G         | | | |                 T T
  G         A G G C
    A T A          A     TGATC
                    C - G
                    C - G
                    G - C
                    T   T
                    C - G
                  C       A
                  T       A
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGCCTAGCATGGATAAGGCACCGTCCTTCTAAGTCGGTGATCGTGGGTTCAA
ATCCCACCGAGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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