The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1774
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 1159710
End posion on genome 1159628
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agctcataat
tRNA gene sequence 
GCGAGGATGGCCCAGGGGTACGGCGGCAGCCTGCTAAGCTGTTTCTCGTAATGAGAGCGT
GGGTTCGAATCCCACTCCTCGCGctt
Downstream region at tRNA end position 
ttaattataa
Secondary structure (Cloverleaf model)
>At1774	Ser	GCT
                   t      Gctt ttaattataa
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     A - T          T A
                    T     C A C C C     A
        G A        G      | | | | |     G
      G     C C C G       G T G G G     C
      G       | | |                 T T
      G     C G G C
        T A        G     TTCTCGTAATGAGAGC
                    G + T
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGATGGCCCAGGGGTACGGCGGCAGCCTGCTAAGCTGTTTCTCGTAATGAGAGCGT
GGGTTCGAATCCCACTCCTCGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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