The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1777
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 1323417
End posion on genome 1323343
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
aacggtttaa
tRNA gene sequence 
GGGCACGTGGCCAAGCATGGATATGGCAACAGCCTCCTAAGCTGTAGATCGGGGGTTCAA
ATCCCCTCGTGCCCGctc
Downstream region at tRNA end position 
gttttatgat
Secondary structure (Cloverleaf model)
>At1777	Arg	CCT
                   a      Gctc gttttatgat
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T
                     C - G
                     G - C          T A
                    T     T C C C C     A
    A C G A        G      + | | | |     A
  T         A C C G       G G G G G     C
  G         | | | |                 T T
  G         T G G C
    A T A          A     AGATC
                    A - T
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCACGTGGCCAAGCATGGATATGGCAACAGCCTCCTAAGCTGTAGATCGGGGGTTCAA
ATCCCCTCGTGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK