The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1779
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 4930
End posion on genome 5007
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
tatccaccga
tRNA gene sequence 
GGGGCCGTAGGGTAGCTTGGCCTATCCTGCGGGCTTCGGGAGCCCGTGACCCGGGTTCAA
ATCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
tctcttgaat
Secondary structure (Cloverleaf model)
>At1779	Pro	CGG
                   a      ACCA tctcttgaat
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    T C G A        A      | | | | |     A
  T         T G G G       C C G G G     C
  G           | | +                 T T
  G         T C C T
    C C T A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGGGTAGCTTGGCCTATCCTGCGGGCTTCGGGAGCCCGTGACCCGGGTTCAA
ATCCCGGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK