The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1780
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 206606
End posion on genome 206683
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
atttcttggt
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGTATGAGCGCCGCCCTTGCAAGGCGGAGGCCCCGGGTTCAA
ATCCCGGCCGGTCCACCA
Downstream region at tRNA end position 
cgaagagatg
Secondary structure (Cloverleaf model)
>At1780	Ala	TGC
                   t      ACCA cgaagagatg
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T A T          G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGTATGAGCGCCGCCCTTGCAAGGCGGAGGCCCCGGGTTCAA
ATCCCGGCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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