The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1785
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 503940
End posion on genome 504026
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
cagggtgtat
tRNA gene sequence 
GCCGGGATAGCCTAGCCTGGTAGGGCGCGGGCCTTGAGAGCCCGTGGGCGTTTGCCCGCC
GGGGTTCAAATCCCCGTCCCGGCGCCA
Downstream region at tRNA end position 
gaatcccatt
Secondary structure (Cloverleaf model)
>At1785	Ser	TGA
                   t      GCCA gaatcccatt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       T C C G       C G G G G     C
    T       + | | |                 T T
    G       G G G C
      G T A        G     TGGGCGTTTGCCCGC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGATAGCCTAGCCTGGTAGGGCGCGGGCCTTGAGAGCCCGTGGGCGTTTGCCCGCC
GGGGTTCAAATCCCCGTCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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