The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1788
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 578139
End posion on genome 578215
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
atttctcggt
tRNA gene sequence 
GCCCCGGTAGCCTAGCCTGGTGGGGCGGGGGACTTGTAATCCCCAGGTCGCGGGTTCAAA
TCCCGCCCGGGGCTCCA
Downstream region at tRNA end position 
agaggggccg
Secondary structure (Cloverleaf model)
>At1788	Thr	TGT
                   t      TCCA agaggggccg
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    C       T C C G       G C G G G     C
    T       + | | |                 T T
    G       G G G C
      G T G        G     AGGTC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCCTAGCCTGGTGGGGCGGGGGACTTGTAATCCCCAGGTCGCGGGTTCAAA
TCCCGCCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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