The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1790
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 579081
End posion on genome 579157
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
ctcggctaat
tRNA gene sequence 
GCCCCGGTGGCTCAGCCTGGTAGAGCGGCCGCTTGGTAAGCGGCAGGTCCCGGGTTCAAA
GCCCGGCCGGGGCTCCA
Downstream region at tRNA end position 
ttctaataaa
Secondary structure (Cloverleaf model)
>At1790	Thr	GGT
                   t      TCCA ttctaataaa
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          G A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G - C
                    C - G
                    C - G
                    G - C
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTGGCTCAGCCTGGTAGAGCGGCCGCTTGGTAAGCGGCAGGTCCCGGGTTCAAA
GCCCGGCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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