The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1791
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 601870
End posion on genome 601956
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
ctctttgtga
tRNA gene sequence 
GCGGGGGTGCCCGAGCCTGGCCAAAGGGGCCGGACTTAAGATCCGGTGCCGTAGGCTGCG
CGGGTTCGAATCCCGCCCCCCGCACCA
Downstream region at tRNA end position 
cttcttgggt
Secondary structure (Cloverleaf model)
>At1791	Leu	TAA
                   a      ACCA cttcttgggt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    C C G A        G      | | | | |     G
  T         G C C C       G C G G G     C
  G           | | |                 T T
  G         A G G G
    C C A A        G     TGCCGTAGGCTGC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCTGGCCAAAGGGGCCGGACTTAAGATCCGGTGCCGTAGGCTGCG
CGGGTTCGAATCCCGCCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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