The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1793
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 795024
End posion on genome 795101
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
atcgggctgt
tRNA gene sequence 
GGGCCGGTAGCTTAGCCTGGTTAGAGCGGCGGACTCTTAATCCGCAGGTCGGGGGTTCAA
ATCCCCCCCGGCCCGCCA
Downstream region at tRNA end position 
gactcttctc
Secondary structure (Cloverleaf model)
>At1793	Lys	CTT
                   t      GCCA gactcttctc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     C C C C C     A
    C C G A        A      | | | | |     A
  T         T T C G       G G G G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTTAGCCTGGTTAGAGCGGCGGACTCTTAATCCGCAGGTCGGGGGTTCAA
ATCCCCCCCGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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