The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1795
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 894672
End posion on genome 894748
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
atgggctcga
tRNA gene sequence 
GCCGGGATAGCCTAGCCTGGTGGGGCGGGGGACTCGTAATCCCCAGGTCCCGGGTTCAAA
TCCCGGTCCCGGCTCCA
Downstream region at tRNA end position 
cactttttgc
Secondary structure (Cloverleaf model)
>At1795	Thr	CGT
                   a      TCCA cactttttgc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       T C C G       C C G G G     C
    T       + | | |                 T T
    G       G G G C
      G T G        G     AGGTC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGATAGCCTAGCCTGGTGGGGCGGGGGACTCGTAATCCCCAGGTCCCGGGTTCAAA
TCCCGGTCCCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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