The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1797
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 894909
End posion on genome 894983
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tttttgtgat
tRNA gene sequence 
GCCGGGATAGCCTAGAGGCCAGGCGGGGGACTGCAGATCCCCTCTACCCGGGTTCAAATC
CCGGTCCCGGCTCCA
Downstream region at tRNA end position 
tttttactaa
Secondary structure (Cloverleaf model)
>At1797	Cys	GCA
                   t      TCCA tttttactaa
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      A     T C C G       C C G G G     C
      G     | | | |                 T T
      G     A G G C
        C C        G     TCTAC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGATAGCCTAGAGGCCAGGCGGGGGACTGCAGATCCCCTCTACCCGGGTTCAAATC
CCGGTCCCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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