The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1798
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 1029944
End posion on genome 1030018
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
ggatgcggga
tRNA gene sequence 
GGGCCGGTAGTTTAGCCAGGATAGAACGCCGCCCTCCGGAGGCGGAGGTCCCGGGTTCAA
ATCCCGGCCGGCCCGcta
Downstream region at tRNA end position 
tagctcccca
Secondary structure (Cloverleaf model)
>At1798	Arg	CCG
                   a      Gcta tagctcccca
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         T T T G       C C G G G     C
  G         + | | |                 T T
  G         G A A C
    A T A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGTTTAGCCAGGATAGAACGCCGCCCTCCGGAGGCGGAGGTCCCGGGTTCAA
ATCCCGGCCGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK