The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1799
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 1180522
End posion on genome 1180599
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
ttttggacgt
tRNA gene sequence 
GCGGTGGTAGTCTAGCCTGGTCTAGGACGCCGGCCTCCCAAGCCGGCGACCCGGGTTCAA
ATCCCGGCCACCGCACCA
Downstream region at tRNA end position 
ttctaacctt
Secondary structure (Cloverleaf model)
>At1799	Gly	CCC
                   t      ACCA ttctaacctt
                     G - C
                     C - G
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    T C T A        G     CGAC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGTGGTAGTCTAGCCTGGTCTAGGACGCCGGCCTCCCAAGCCGGCGACCCGGGTTCAA
ATCCCGGCCACCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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