The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1802
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 1376125
End posion on genome 1376211
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
accaaatgat
tRNA gene sequence 
GCCGGGGTAGCCTAGCCAGGGAAGGCGCGGGACTCGAGATCCCGTGGGCGTTCGCCCACC
GGGGTTCAAATCCCCGCCCCGGCGCCA
Downstream region at tRNA end position 
cctgccgagc
Secondary structure (Cloverleaf model)
>At1802	Ser	CGA
                   t      GCCA cctgccgagc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       T C C G       C G G G G     C
    A       | | | |                 T T
    G       A G G C
      G G A        G     TGGGCGTTCGCCCAC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGCCTAGCCAGGGAAGGCGCGGGACTCGAGATCCCGTGGGCGTTCGCCCACC
GGGGTTCAAATCCCCGCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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