The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1806
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 150080
End posion on genome 150004
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
tttcgagggt
tRNA gene sequence 
GGGGCGGTAGCTCAGCCTGGGAGAGCACCGGACTGAAGATCCGGGTGTCGGGGGTTCAAA
TCCCCCCCGCCCCACCA
Downstream region at tRNA end position 
gcctcgtgcg
Secondary structure (Cloverleaf model)
>At1806	Phe	GAA
                   t      ACCA gcctcgtgcg
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G G G G G     C
    T       | | | |                 T T
    G       G A G C
      G G A        A     GTGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCGGTAGCTCAGCCTGGGAGAGCACCGGACTGAAGATCCGGGTGTCGGGGGTTCAAA
TCCCCCCCGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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