The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1810
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 941806
End posion on genome 941729
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
acagtagggt
tRNA gene sequence 
CCCGCGGTAGCCTAGCCTGGTAGTGGCGGCGGACTGTAGATCCGCAGGTCCCCGGTTCAA
ATCCGGGCCGCGGGACCA
Downstream region at tRNA end position 
ccagaatttc
Secondary structure (Cloverleaf model)
>At1810	Tyr	GTA
                   t      ACCA ccagaatttc
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G G C C     A
    C C G A        A      | | | | |     A
  T         T C C G       C C C G G     C
  G           | | |                 T T
  G         T G G C
    T A G          G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCGGTAGCCTAGCCTGGTAGTGGCGGCGGACTGTAGATCCGCAGGTCCCCGGTTCAA
ATCCGGGCCGCGGGACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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