The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1813
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 1103101
End posion on genome 1103024
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ggcaccaaat
tRNA gene sequence 
GGGCCCGTGGCTCAGCCTGGTTAGAGCGCCCGCCTGATAAGCGGGAGGTCCGGGGTTCGA
AGCCCCGCGGGCCCACCA
Downstream region at tRNA end position 
gaacttttct
Secondary structure (Cloverleaf model)
>At1813	Ile	GAT
                   t      ACCA gaacttttct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          G A
                    T     G C C C C     A
    C C G A        G      | | | | |     G
  T         C T C G       C G G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCTCAGCCTGGTTAGAGCGCCCGCCTGATAAGCGGGAGGTCCGGGGTTCGA
AGCCCCGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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