The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1815
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 1261400
End posion on genome 1261323
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
tttcgggcgt
tRNA gene sequence 
GGACCGGTAGCCTAGCCAGGACAGGGCGGCGGCCTCCTAAGCCGCAGGTCCGGGGTTCAA
ATCCCCGCCGGTCCGCCA
Downstream region at tRNA end position 
gattttaaag
Secondary structure (Cloverleaf model)
>At1815	Arg	CCT
                   t      GCCA gattttaaag
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  A         T C C G       C G G G G     C
  G         + | | |                 T T
  G         G G G C
    A C A          G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCGGTAGCCTAGCCAGGACAGGGCGGCGGCCTCCTAAGCCGCAGGTCCGGGGTTCAA
ATCCCCGCCGGTCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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