The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At1816 |
Genome ID | AL096836 |
Phylum/Class | Euryarchaeota |
Species | Pyrococcus abyssi [AL096836] |
Start position on genome
|
1330624
|
End posion on genome
|
1330476
|
Amino Acid
|
Trp
|
Anticodon
|
CCA
|
Upstream region at tRNA start position
|
ttaaacgagt
|
tRNA gene sequence
|
GGGGGCGTGGTGTAGCCTGGTCTATCATCGCGGGCTCCAGACCCGCGGACCGGGGTTCAA ATCCCCGCGCCCCCACCA
|
Downstream region at tRNA end position
|
gttcactttt
|
Secondary structure (Cloverleaf model) | >At1816 Trp CCA
t ACCA gttcactttt
G - C
G - C
G - C
G - C
G - C
C - G
G - C T A
T G C C C C A
C C G A G | | | | | A
T T G T G C G G G G C
G | | + T T
G T C A T
T C T A C GGAC
G - C
C - G
G - C
G - C
G - C
C A
T G *
C C A
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | GGGGGCGTGGTGTAGCCTGGTCTATCATCGCGGGCTCCAGaggccatgaggacaggcggg tttgctgacctcggggcgtgatgaacctttggagccccgagggccggagaaACCCGCGGA CCGGGGTTCAAATCCCCGCGCCCCCACCA |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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