The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1819
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 1413296
End posion on genome 1413209
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position
ccttaatcga
tRNA gene sequence
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGGGGGACTCAAGATCCCCTCCCGTAGGGGTTC
CGGGGTTCAAATCCCCGCCCCCGCACCA
Downstream region at tRNA end position
atttgaatga
Secondary structure (Cloverleaf model)
>At1819	Leu	CAA
                   a      ACCA atttgaatga
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        T      | | | | |     A
  T         G C C G       C G G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCCCGTAGGGGTTC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGGGGGACTCAAGATCCCCTCCCGTAGGGGTTC
CGGGGTTCAAATCCCCGCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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