The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1821
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 1466472
End posion on genome 1466395
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
acgattggga
tRNA gene sequence 
GCCCCGGTGGCCTAGCCTGGATAGGGCGCGAGGCTGCGGACCTCGAGGTCCGGGGTTCAA
ATCCCCGCCGGGGCGCCA
Downstream region at tRNA end position 
tccataatta
Secondary structure (Cloverleaf model)
>At1821	Arg	GCG
                   a      GCCA tccataatta
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        G      | | | | |     A
  T         T C C G       C G G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          G     AGGTC
                    C - G
                    G - C
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTGGCCTAGCCTGGATAGGGCGCGAGGCTGCGGACCTCGAGGTCCGGGGTTCAA
ATCCCCGCCGGGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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