The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At1823 |
Genome ID | AL096836 |
Phylum/Class | Euryarchaeota |
Species | Pyrococcus abyssi [AL096836] |
Start position on genome
|
1685759
|
End posion on genome
|
1685683
|
Amino Acid
|
Arg
|
Anticodon
|
TCT
|
Upstream region at tRNA start position
|
tctcccgagt
|
tRNA gene sequence
|
GGGCCCGTAGCCTAGCAGGATAGGGCGCCGGCCTTCTAAGCCGGAGGTCGCGGGTTCGAA TCCCGCCGGGCCCGCCA
|
Downstream region at tRNA end position
|
cttacgattc
|
Secondary structure (Cloverleaf model) | >At1823 Arg TCT
t GCCA cttacgattc
G - C
G - C
G - C
C - G
C - G
C - G
G - C T A
T C G C C C A
C G A A | | | | | G
A T C C G G C G G G C
G + | | | T T
G G G G C
A T A G AGGTC
C - G
C - G
G - C
G - C
C - G
C A
T A
T C T
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | GGGCCCGTAGCCTAGCAGGATAGGGCGCCGGCCTTCTAAGCCGGAGGTCGCGGGTTCGAA TCCCGCCGGGCCCGCCA |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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