The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1824
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 1761997
End posion on genome 1761923
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
aagaatttgt
tRNA gene sequence 
GGGCCCGTGGCCTAGTCTGGAGAGGGCGTCGGCCTTCGGAGCCGAAGGTCGCGGGTTCAA
ATCCCGCCGGGCCCGcta
Downstream region at tRNA end position 
cttctgttct
Secondary structure (Cloverleaf model)
>At1824	Arg	TCG
                   t      Gcta cttctgttct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
    C T G A        G      | | | | |     A
  T         T C C G       G C G G G     C
  G         + | | |                 T T
  G         G G G C
    A G A          G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCCTAGTCTGGAGAGGGCGTCGGCCTTCGGAGCCGAAGGTCGCGGGTTCAA
ATCCCGCCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK