The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1825
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 138486
End posion on genome 138563
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
ttttaaaggt
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGTATGAGCGCCGCCCTTGCAAGGCGGAGGCCCCGGGTTCAA
ATCCCGGCCGGTCCACCA
Downstream region at tRNA end position 
cgaagagatg
Secondary structure (Cloverleaf model)
>At1825	Ala	TGC
                   t      ACCA cgaagagatg
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T A T          G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGTATGAGCGCCGCCCTTGCAAGGCGGAGGCCCCGGGTTCAA
ATCCCGGCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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