The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1828
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 508454
End posion on genome 508531
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
accaatgggt
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGTTAGAGCACCGGGCTTTTAACCCGGTGGTCGCGGGTTCAA
ATCCCGCCCGGCCCGCCA
Downstream region at tRNA end position 
tgaatataaa
Secondary structure (Cloverleaf model)
>At1828	Lys	TTT
                   t      GCCA tgaatataaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     C G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       G C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          A     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    T T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGTTAGAGCACCGGGCTTTTAACCCGGTGGTCGCGGGTTCAA
ATCCCGCCCGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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