The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1829
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 561295
End posion on genome 561381
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position
aattgggagc
tRNA gene sequence
GCCGGGGTAGCCTAGTCAGGGAAGGCGCGGGACTCGAGATCCCGTGGGCGTTCGCCCGCC
GGGGTTCAAATCCCCGCCCCGGCGCCA
Downstream region at tRNA end position
tttgttaagc
Secondary structure (Cloverleaf model)
>At1829	Ser	CGA
                   c      GCCA tttgttaagc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
      T G A        A      | | | | |     A
    C       T C C G       C G G G G     C
    A       | | | |                 T T
    G       A G G C
      G G A        G     TGGGCGTTCGCCCGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGCCTAGTCAGGGAAGGCGCGGGACTCGAGATCCCGTGGGCGTTCGCCCGCC
GGGGTTCAAATCCCCGCCCCGGCGCCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK