The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1829
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 561295
End posion on genome 561381
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
aattgggagc
tRNA gene sequence 
GCCGGGGTAGCCTAGTCAGGGAAGGCGCGGGACTCGAGATCCCGTGGGCGTTCGCCCGCC
GGGGTTCAAATCCCCGCCCCGGCGCCA
Downstream region at tRNA end position 
tttgttaagc
Secondary structure (Cloverleaf model)
>At1829	Ser	CGA
                   c      GCCA tttgttaagc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
      T G A        A      | | | | |     A
    C       T C C G       C G G G G     C
    A       | | | |                 T T
    G       A G G C
      G G A        G     TGGGCGTTCGCCCGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGCCTAGTCAGGGAAGGCGCGGGACTCGAGATCCCGTGGGCGTTCGCCCGCC
GGGGTTCAAATCCCCGCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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