The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1832
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 827437
End posion on genome 827514
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
agagttgggt
tRNA gene sequence 
GGGCCGGTAGTTTAGCCAGGAGAGAACGCCGCCCTCCGGAGGCGGAGGTCCCGGGTTCAA
ATCCCGGCCGGCCCGCCA
Downstream region at tRNA end position 
gttgatttat
Secondary structure (Cloverleaf model)
>At1832	Arg	CCG
                   t      GCCA gttgatttat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         T T T G       C C G G G     C
  G         + | | |                 T T
  G         G A A C
    A G A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGTTTAGCCAGGAGAGAACGCCGCCCTCCGGAGGCGGAGGTCCCGGGTTCAA
ATCCCGGCCGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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