The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1834
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 920870
End posion on genome 920947
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
gtcttaaggt
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGTATGAGCGCCGCCTTGGCAAGGCGGAGGCCCGGGTTCAAA
TCCCCGGCCGGTCCACCA
Downstream region at tRNA end position 
caaattttgg
Secondary structure (Cloverleaf model)
>At1834	Ala	GGC
                   t      ACCA caaattttgg
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          C T
                    T     G G C C C     A
    C C G A        A      |   | |       A
  T         C T C G       C G G G T     A
  G         | | | |                 T C
  G         G A G C
    T A T          G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGTATGAGCGCCGCCTTGGCAAGGCGGAGGCCCGGGTTCAAA
TCCCCGGCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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