The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1836
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 1054563
End posion on genome 1054640
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
acagtagggt
tRNA gene sequence 
CCCGCGGTAGCCTAGCCTGGTAGTGGCGGCGGACTGTAGATCCGCAGGTCCCCGGTTCAA
ATCCGGGCCGCGGGACCA
Downstream region at tRNA end position 
ccaaaattat
Secondary structure (Cloverleaf model)
>At1836	Tyr	GTA
                   t      ACCA ccaaaattat
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G G C C     A
    C C G A        A      | | | | |     A
  T         T C C G       C C C G G     C
  G           | | |                 T T
  G         T G G C
    T A G          G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCGGTAGCCTAGCCTGGTAGTGGCGGCGGACTGTAGATCCGCAGGTCCCCGGTTCAA
ATCCGGGCCGCGGGACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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