The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1842
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 1844702
End posion on genome 1844779
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
ccttttctga
tRNA gene sequence 
GGGCCGGTGGCCTAGCCTGGATGGGGCGTCGGCCTTCGGAGCCGAAGGTCCCGGGTTCAA
ATCCCGGCCGGCCCGCCA
Downstream region at tRNA end position 
atcacaaatc
Secondary structure (Cloverleaf model)
>At1842	Arg	TCG
                   a      GCCA atcacaaatc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  T         T C C G       C C G G G     C
  G         + | | |                 T T
  G         G G G C
    A T G          G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTGGCCTAGCCTGGATGGGGCGTCGGCCTTCGGAGCCGAAGGTCCCGGGTTCAA
ATCCCGGCCGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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