The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1844
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 77737
End posion on genome 77660
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
ccagttgggt
tRNA gene sequence 
GCGGTGGTAGTCTAGCCTGGTCTAGGACGCCGGCCTTCCGAGCCGGCGACCCGGGTTCAA
ATCCCGGCCACCGCACCA
Downstream region at tRNA end position 
caatcttttc
Secondary structure (Cloverleaf model)
>At1844	Gly	TCC
                   t      ACCA caatcttttc
                     G - C
                     C - G
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    T C T A        G     CGAC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGTGGTAGTCTAGCCTGGTCTAGGACGCCGGCCTTCCGAGCCGGCGACCCGGGTTCAA
ATCCCGGCCACCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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