The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1845
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 77821
End posion on genome 77745
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
tatcccaggt
tRNA gene sequence 
GGGGCGGTAGCTCAGCCTGGGAGAGCACCGGACTGAAGATCCGGGTGTCGGGGGTTCAAA
TCCCCCCCGCCCCACCA
Downstream region at tRNA end position 
gttgggtgcg
Secondary structure (Cloverleaf model)
>At1845	Phe	GAA
                   t      ACCA gttgggtgcg
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G G G G G     C
    T       | | | |                 T T
    G       G A G C
      G G A        A     GTGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCGGTAGCTCAGCCTGGGAGAGCACCGGACTGAAGATCCGGGTGTCGGGGGTTCAAA
TCCCCCCCGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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