The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1848
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 337898
End posion on genome 337811
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
cacttggagt
tRNA gene sequence 
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGGGGGACTCAAGATCCCCTCCCGTAGGGGTTC
CGGGGTTCAAATCCCCGCCCCCGCACCA
Downstream region at tRNA end position 
acttaacgtt
Secondary structure (Cloverleaf model)
>At1848	Leu	CAA
                   t      ACCA acttaacgtt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        T      | | | | |     A
  T         G C C G       C G G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCCCGTAGGGGTTC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGGGGGACTCAAGATCCCCTCCCGTAGGGGTTC
CGGGGTTCAAATCCCCGCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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